PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020689368.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family WRKY
Protein Properties Length: 258aa    MW: 28773.2 Da    PI: 7.2684
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020689368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.82.5e-19101163359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS...STTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae...dpkvveitYegeHnhe 59 
                     Dgy+WrKYG K+++g +fprsYY+Ct++   gCp++k ++++++   +p   e++Y+ +H ++
  XP_020689368.1 101 DGYEWRKYGEKNIQGYKFPRSYYKCTHNkdqGCPATKTIQQKEDndcNPPKYEVIYSLHHICK 163
                     9**************************99999*******998752224567899999888775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MAALPRTHTS DAIDHLSKGY EHLTQLRALL SSSPARTNTA ATAIQLLDKA LHCVTAALSE  60
LQISSSSHHA SSIENNMNCT EPCKRRRVQR WTILTSVPHF DGYEWRKYGE KNIQGYKFPR  120
SYYKCTHNKD QGCPATKTIQ QKEDNDCNPP KYEVIYSLHH ICKTMGTNTH LDKKYSSAPI  180
NNTSSTTTTS SCQANSSQPL LTLVADQLCP MESMLLSAEP QIEENGGIEN SNTKSSPSTD  240
LDFDSEWAKW LLSCTEKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18488KRRRV
284111KRRRVQRWTILTSVPHFDGYEWRKYGEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.12e-16WRKY family protein