PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020689419.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24474.8 Da    PI: 4.6396
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020689419.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.21.6e-113167743
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    s r  t+  R +gi KKA+ELSvLC+++v+   fs++
  XP_020689419.2 31 SARINTYKSRIKGIEKKAKELSVLCGVDVLFCSFSPD 67
                    567789*************************999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
ENFRLFYLIL LAGEEAMGRA KLQIRYREKP SARINTYKSR IKGIEKKAKE LSVLCGVDVL  60
FCSFSPDLSA FHYWANEPSE FHRIIYRYKS ISSQKPQCEV PSLPLISSFQ EELAAITKKL  120
EEVRQMKKFL EAEKMGYSSQ NCRADSIGAD GDFCPNAAIL KDDEDIFSLL EELGEDLFIS  180
DLPSNSSIDV FKESYFDCRD NFFDADPADF QFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-11M-type_MADS family protein