PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020689455.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 244aa    MW: 28626.5 Da    PI: 9.289
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020689455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.62.8e-171151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+s r  t+ kRr+g+ KK eELS+LCd+++++ii++++
  XP_020689455.1 11 IANDSARRATLKKRRKGLVKKVEELSTLCDVKACLIIYAPS 51
                    89************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MARKKVKLEW IANDSARRAT LKKRRKGLVK KVEELSTLCD VKACLIIYAP SDAQPEVWPS  60
PHEANKVLAK LRRLPEMEQS KKMMNQEGFM RHRIGKLQEQ IRKQERENRE VETMLIMYKG  120
LMGKMNLQSL EMRSLTSLAW HIELKLKEVK RRLEHLPLEM VAAKADIKEE LPPMAEIIMK  180
EVAVAAAEPT PETKEKLVFD EAMEDLQRQD WFRDIMNPQE EIMNNVPFYE HGSPAWLDSY  240
YPKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLEWIANDSARRATLKKRR
22226KKRRK
3146152LKEVKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-45M-type_MADS family protein