PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689473.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 501aa MW: 55780.5 Da PI: 8.3954

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.2	5.4e-39	203	279	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dl+ ak+yhr+h+vCe hsk+p v+v+g+e+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+ XP_020689473.1 203 CQVEGCSIDLTAAKDYHRKHRVCERHSKSPRVIVAGHERRFCQQCSRFHDLCEFDQKKRSCRRRLSDHNARRRKAQP 279 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MACVETVKSY CSWQGRGCTS SSFFSICCGM EWNFKNPLQW DWENLGLFSG KESEVSKSTE 60 LSEWRAEGGA ISNGSMYSSG SGTCSGSELG NGSLKKTVTA SVGFLSKEGS KTSEVNLEAA 120 QGIIKNQFKN YEMAQGEDFR TSPVIVRCVG TGEPPIGLKL GKRTYFENLG SANIKTSSVS 180 MTPPAASVRR SRASHQAIQH AYCQVEGCSI DLTAAKDYHR KHRVCERHSK SPRVIVAGHE 240 RRFCQQCSRF HDLCEFDQKK RSCRRRLSDH NARRRKAQPE TISFNPSTLP SLFYDERQQM 300 SFFLNLAPFS HVRPSTSSML DQSDGFSLSM RKGSWLKTIK ADVDRQLQFP EMDFSNKIKP 360 SRDGLNRLIP FKCTTNEVLN QGEEAYVPTS NLNGAPDLRR ALSLLSSDAW CPSSTEQSSM 420 IQLAITNPIT TSNLRVPTAN LAPECWQNDN SLAEQALPFN LHGNGSHIQD LQLSKAPYES 480 SFFESNQAFS KSDGHFTEFK T

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MACVETVKSY CSWQGRGCTS SSFFSICCGM EWNFKNPLQW DWENLGLFSG KESEVSKSTE  60
LSEWRAEGGA ISNGSMYSSG SGTCSGSELG NGSLKKTVTA SVGFLSKEGS KTSEVNLEAA  120
QGIIKNQFKN YEMAQGEDFR TSPVIVRCVG TGEPPIGLKL GKRTYFENLG SANIKTSSVS  180
MTPPAASVRR SRASHQAIQH AYCQVEGCSI DLTAAKDYHR KHRVCERHSK SPRVIVAGHE  240
RRFCQQCSRF HDLCEFDQKK RSCRRRLSDH NARRRKAQPE TISFNPSTLP SLFYDERQQM  300
SFFLNLAPFS HVRPSTSSML DQSDGFSLSM RKGSWLKTIK ADVDRQLQFP EMDFSNKIKP  360
SRDGLNRLIP FKCTTNEVLN QGEEAYVPTS NLNGAPDLRR ALSLLSSDAW CPSSTEQSSM  420
IQLAITNPIT TSNLRVPTAN LAPECWQNDN SLAEQALPFN LHGNGSHIQD LQLSKAPYES  480
SFFESNQAFS KSDGHFTEFK T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	276	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	7e-58	SBP family protein