PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020689490.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27133.2 Da    PI: 9.9957
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020689490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.2e-151151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i+n+  r  t+ kRr+g+lKK +ELS+LC++ ++ +++s++
  XP_020689490.1 11 ISNEATRRATLKKRRKGLLKKLKELSILCNVSACAVLYSPN 51
                    99*************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MARRRLKLAW ISNEATRRAT LKKRRKGLLK KLKELSILCN VSACAVLYSP NEPQPEVWPS  60
APEATGILSR FRAMPEMEQS KKMMNQESFF SQRVAKLQDQ LRRQDRENRE LESAALLCEC  120
IAGASVNNVG IEELAAMAWL LNLKTKAVQD RIDHLRIAAA LKGPLLLRDD KSSTYYNEAM  180
RWLANGGDGG AAMARVQNYR QMAGQLSGVG GGSGGVVVGD NVLTAAAAAA AAAFGAENQG  240
NWENLLPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRRLKLAWISNEATRRATLKKRR
21732RRATLKKRRKGLLKKL
32226KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-33M-type_MADS family protein