PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689502.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GeBP

Protein Properties

Length: 426aa MW: 46545.9 Da PI: 4.5282

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	117.7	6.6e-37	125	223	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 lfqrlw++eDei++LqG+++f++++g+ +++ d+ fye++kk+++++++k+ql+eK+rrLKkK+++ v+++ sgke++f+++h+q +fe+s+ XP_020689502.1 125 LFQRLWTDEDEITILQGFLEFTTQRGTthASHQyDTGPFYEQIKKQLQLEFNKNQLIEKLRRLKKKYRNVVNRMVSGKEFAFKSAHEQATFEISR 219 79**********************98867778********************************************************* PP DUF573 94 kiWg 97 kiW XP_020689502.1 220 KIWS 223 *6 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MPPVEEEERG VFEQDDELDD SDGDDSDMED DLDDDEEEFP DVSPPPHSQP PFRPKEESNS 60 PITFLNPNPN HAAASTRTAP QNGSIKAVPI SQNDVFTPPP AHIVSAAEES RRVASAASVD 120 DSRRLFQRLW TDEDEITILQ GFLEFTTQRG TTHASHQYDT GPFYEQIKKQ LQLEFNKNQL 180 IEKLRRLKKK YRNVVNRMVS GKEFAFKSAH EQATFEISRK IWSASIKRSR DSEDDEFTPN 240 PSSAVVEFDS GFGVGTIAAD GSLSSDRKLS RSSKRRIRIR NSEQEAAAAA AAAAAAAAAA 300 AAGVAVEVPI AAPPDPPFSV PIPSIIEETV KSCLSPLFKE LLQSAMAGPQ GGLIPGIGCL 360 GGGGLLGMNP LQLGIGNLQG NLPVDEKWRN QNILELEVYL KRIELMRDQI KLTLDELKSS 420 TPSAGD

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MPPVEEEERG VFEQDDELDD SDGDDSDMED DLDDDEEEFP DVSPPPHSQP PFRPKEESNS  60
PITFLNPNPN HAAASTRTAP QNGSIKAVPI SQNDVFTPPP AHIVSAAEES RRVASAASVD  120
DSRRLFQRLW TDEDEITILQ GFLEFTTQRG TTHASHQYDT GPFYEQIKKQ LQLEFNKNQL  180
IEKLRRLKKK YRNVVNRMVS GKEFAFKSAH EQATFEISRK IWSASIKRSR DSEDDEFTPN  240
PSSAVVEFDS GFGVGTIAAD GSLSSDRKLS RSSKRRIRIR NSEQEAAAAA AAAAAAAAAA  300
AAGVAVEVPI AAPPDPPFSV PIPSIIEETV KSCLSPLFKE LLQSAMAGPQ GGLIPGIGCL  360
GGGGLLGMNP LQLGIGNLQG NLPVDEKWRN QNILELEVYL KRIELMRDQI KLTLDELKSS  420
TPSAGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-42	GeBP family protein