PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689511.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 327aa MW: 36767.1 Da PI: 6.8482

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++++G +W+++++ g+ R++k+c++rw +yl XP_020689511.1 14 RGLWSPEEDEKLLKHIAEYGHTSWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.2	2.6e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+++++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_020689511.1 67 RGKFSQEEEDIIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNT 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MGKQSYLHKQ KLRRGLWSPE EDEKLLKHIA EYGHTSWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGKF SQEEEDIIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNT CIKKKLRKTG 120 IDPNTHKPFS EIEGTEDDKI SSGSGSLKQT ELESDLTLMQ GIEDSASKSN GYFSLSKLSC 180 STSTTTLSVS SNPLLLLHNQ NNRGLGLNPE LSCSSIASAT TFVSSSIFYN SMDSNSSSSK 240 SSSFWFDGLS SWPDLTTERG NKYLLTGDSE EMERFQYLQG KFLAPSLPHY QSQPLHAGDL 300 QVESHFELES LNLCFQNHQP ELPQLQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	2e-79	MYB family protein