PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689559.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 25512.9 Da PI: 4.7485

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.5e-18	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le F ++r++ ++ LA+++gL+ +qV vWFqNrRa++k XP_020689559.1 56 KKRRLSDEQVRFLEMNFGMERKLESCRKINLASEIGLEPKQVAVWFQNRRARWK 109 56689************************************************9 PP
2	HD-ZIP_I/II	119.7	1.5e-38	56	146	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE++F +e+kLe+ rK +la+e+gl+p+qvavWFqnrRAR+k+kqlE++y +Lk+++da++ e++rLe+e +L+++l XP_020689559.1 56 KKRRLSDEQVRFLEMNFGMERKLESCRKINLASEIGLEPKQVAVWFQNRRARWKSKQLEEEYIHLKSSHDAVMIEKCRLENEILNLKDKLV 146 9**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MEDAMKSMEE EDSLFSSIVS SGFYPPMQQE ESKVRRPRKK AKDVIDGEAE VCVEGKKRRL 60 SDEQVRFLEM NFGMERKLES CRKINLASEI GLEPKQVAVW FQNRRARWKS KQLEEEYIHL 120 KSSHDAVMIE KCRLENEILN LKDKLVQSEE EIRRLSSPSA ASELTGVGSP ISPLTMTTYF 180 GEFGMEEENG IMHMSPYSDN YSYRMEMTEE PSLWDGMTNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	59	RKKAKDVIDGEAEVCVEGKKRR
2	104	112	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	1e-44	HD-ZIP family protein