PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020689581.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 190aa    MW: 21722.7 Da    PI: 9.9558
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020689581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.11.7e-2423109390
            FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     Y++YA+++GFsvrk++++   +++ i++++fvCsk g+++e+++  +k + +r++trtgC a+++ + +kdg w v+k ++ HnHela
  XP_020689581.1  23 YCQYAHSTGFSVRKEHHHFWPNTRLIKSKDFVCSKAGFKKENESG-TKLKYRRSSTRTGCPAMIRFSVSKDGLWSVYKSVESHNHELA 109
                     99****************************************999.99999***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MGSVDMRKLL GVYNCEKEAY EKYCQYAHST GFSVRKEHHH FWPNTRLIKS KDFVCSKAGF  60
KKENESGTKL KYRRSSTRTG CPAMIRFSVS KDGLWSVYKS VESHNHELAR PDDQYLLRSA  120
RSISVDNAAV LKSMTEAGIR TVDAFMYLSD EVGGVANLGF TKRDAYNHIQ KERRAKFESG  180
DTNSLIKLFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-22FAR1 family protein