PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689793.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 244aa MW: 27785.4 Da PI: 7.0097

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.7e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv + G +W+++++ g+ R++k+c++rw +yl XP_020689793.1 14 KGPWTAEEDKKLVSFILSNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.8	3.9e-16	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++ XP_020689793.1 70 LTDAEEKLVIDLHASLGNR-WSKIASKLP-GRTDNEIKNHWNTH 111 5899*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGRQPCCDKL KVKKGPWTAE EDKKLVSFIL SNGHCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL TDAEEKLVID LHASLGNRWS KIASKLPGRT DNEIKNHWNT HIKKKLLKMG 120 IDPVTHKLLN DKTSSTMAAS PNSTVTDDGK FSKKDEPVDQ ENAINQTSKE ESTNPQQNRE 180 DQVIGFLWDD ELSFTDKLWS SPVSNEAWER SSEWLLDYQD FGIGDLELER VESAGFADEQ 240 IKLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	4e-87	MYB family protein