PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020689878.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 909aa    MW: 101163 Da    PI: 6.4107
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020689878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3789.7e-25132233199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_020689878.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELVARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVTGDSVLFI--WNE 222
                     99*****************************8544444..49************************************************..788 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_020689878.1 223 NNQLLLGIRRA 233
                     8889****997 PP
2Auxin_resp115.35.6e-38258341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F++++nPra++seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdl+pv+WpnS+Wrs+k
  XP_020689878.1 258 AAHAAATNSRFTIFFNPRACPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLNPVHWPNSHWRSVK 341
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    
MRLSSSSLSS SDLTQQPQEG EQRCLNSELW HACAGPLVSL PVVGTRVVYF PQGHSEQVAA  60
STNKEIDSHI PNYPSLPPQL ICQLHDVTMH ADVETDEVYA QMTLQPLNPQ EQKDPYLPAE  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELVARDLHGN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VTGDSVLFIW NENNQLLLGI RRANRPQTVM  240
PSSVISSDSM HIGLLAAAAH AAATNSRFTI FFNPRACPSE FVIPLAKYIK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLNPV HWPNSHWRSV KVGWDESTAA ERQPRVSLWE  360
IEPLTTFPMY PSPFSLRLKR PWPPGLPPLY GGNIGDLGLN SALAWLRDSG NLGVQPLNFQ  420
GIGVSPYNQT RFDNSFGLKP DIYQATTAEA IQDMRPMEPL KQVPTNLQFQ HTPSIINRPN  480
NLLSNQASQH SQSQHPFVQN SQENQGHNHA QSSFLLQQLQ QCQSFGDQQQ QLKQIQQNPQ  540
VQRQQQQQQQ QQHKQFYDQV ISGIMLGQTM QPSVSQSLSP SLQKISSISH PLSFPDSNGN  600
YVSTPGTSSL NGVLQPFSYE ETSNLFSSPM TSPLITSSPW LSKQTALEPL LPSGAQCVLP  660
QVDQFSSLFS DIPRDTTMLA PFPGRDCSNN HEGVDPQHLL FGANLELSPL LVQNGVSGLR  720
SIGCETNTAR VSHAANNFLS VTEVDFQLNQ ALTNSGGLEE SGLLHSPDNI GQEISQNGTY  780
VKVYKSGTFG RSLDITRYNS YPELRSELGR LFGLDLEDPL RSGWQLVFVD RENDVLLVGD  840
DPWPEFVNNV WCIKILSLQE VQQMAKQGVN LINSAPLRKL STGSCDNYIA QQESRNLSSE  900
IMPVASLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein