PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020689936.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 464aa    MW: 51150.9 Da    PI: 7.2943
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020689936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS176.81.7e-541054402374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL   A a++sg+ ++aq+lL  l+elasp+gdp++Rla+y ++AL + l++     y++ +p+           +al  f+evsP++ + + 
  XP_020689936.1 105 EQLLNPLAAAIESGNISRAQHLLYVLQELASPTGDPNHRLAFYGLQALTHCLSG----GYAKAEPKGF--------RSALIKFHEVSPWFALPNC 187
                     689999***********************************************9....4433344433........356667************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +aN aIl a +g++r+H++D ++s+G+QWp++l+aL+ Rp+gpp ++++T+v++ ++g   s+ e    g +L ++A++++v++     +++r e
  XP_020689936.1 188 LANAAILSASAGAKRLHVVDAGVSHGVQWPTMLEALTRRPGGPPsMVKLTVVDAGSNGpfgSAPEGYDFGPQLMRYAKSIEVDL-----IVERGE 277
                     ****************************************9999789*******999999*********************997.....455677 PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++e  + r   +E ++V+ +++  r              +L++v++++P++vv++e e + ++e +  +f +  e+++ +++s++a +    + r
  XP_020689936.1 278 MVE--RRRGGDEERVVVCAQFRAGRAG----------LGFLRAVREIEPDLVVLSEGEEEGEGEGL--GFGRRAEVMWRFLESTSAAF----KGR 354
                     774..4456779*********988886..........36*******************99988887..799999**********8886....677 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                        Er++++ e+  v+  + +         e+W+e++e  GF++  ++e++++  ++llrk++++ +++   ++g + l Wk++++ ++S W+
  XP_020689936.1 355 ECEERRVMEGEAARVLEERRE------GGRERWKEKMEGLGFREEVFGEEVVEAGRALLRKYDGN-WEMTfGSEGRVGLWWKGQAVSFCSLWK 440
                     777777777778777754433......57789*******************************55.555514456666**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MDWLEDSIFP LPFLDDPYTL TEEIARYDWW PQTQNQIQSP TIAAVAPPAA VNPKAITPKS  60
ELPKKRKFQS NPPAAQRRRT GNEGHNEKKT HGGVTGGSRE ARWAEQLLNP LAAAIESGNI  120
SRAQHLLYVL QELASPTGDP NHRLAFYGLQ ALTHCLSGGY AKAEPKGFRS ALIKFHEVSP  180
WFALPNCLAN AAILSASAGA KRLHVVDAGV SHGVQWPTML EALTRRPGGP PSMVKLTVVD  240
AGSNGPFGSA PEGYDFGPQL MRYAKSIEVD LIVERGEMVE RRRGGDEERV VVCAQFRAGR  300
AGLGFLRAVR EIEPDLVVLS EGEEEGEGEG LGFGRRAEVM WRFLESTSAA FKGRECEERR  360
VMEGEAARVL EERREGGRER WKEKMEGLGF REEVFGEEVV EAGRALLRKY DGNWEMTFGS  420
EGRVGLWWKG QAVSFCSLWK LARHKTTATA AVAAAGCGNG VRHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15867PKSELPKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-75GRAS family protein