PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020690017.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 307aa    MW: 34924.1 Da    PI: 4.8474
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020690017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT eEde+lv+++++ G g+W++ ++  g+ R++k+c++rw +yl
   XP_020690017.1 14 RGRWTVEEDEILVNYIAENGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+e++++++   G++ W+ Ia+ ++ gRt++++k++w+++l
   XP_020690017.1  67 RGSISKEEEEIIIKLHSSIGNR-WSVIAAQLP-GRTDNEIKNYWNSHL 112
                      78889*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MVRAPCCDKK GLKRGRWTVE EDEILVNYIA ENGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGSI SKEEEEIIIK LHSSIGNRWS VIAAQLPGRT DNEIKNYWNS HLSRRIHCFR  120
RHGDSETFIY DIGKIPSPGK RRGGRTSRAA MMKNSILKVS GSIRKDQTNQ DPNQIMNNTD  180
NNLCIASSSS ALTEKENSSS TFDFDFDFEE VLGPNGDKDE VSLEENEIIE SRSDDGPCAA  240
QKEVELAMEG KESGTVMTEM EKMLKWDLES LEAKLWEEDG SEMWPWFYDV SGNSSFDEES  300
LCSWLLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-62MYB family protein