PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020690144.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 404aa MW: 44830.4 Da PI: 6.406

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020690144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	75	94	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F+++ L H+r XP_020690144.1 75 QCKVCGKEFPSWKALFGHMR 94 7******************8 PP
2	zf-C2H2	13.6	0.0002	308	330	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk Fs+ L H r+H XP_020690144.1 308 HECSICGKIFSSGQALGGHKRSH 330 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MEKHRCKICS KCFPCGRSLG GHMRSHMRFC SSVKEKEKLE NSSYVLRENP KKTGMLLDFA 60 GEDPTSSSSS LKTKQCKVCG KEFPSWKALF GHMRCHSNKI CRRSFEAEKQ EEDQEEEEEV 120 SWKHRSMLTS AASSITEYEQ EQEEVAISLM MLSRDVGGYW SIAADSSDKQ SEVMEDDGLI 180 KRSEEFGGFD LEYSGEESGK QKIMTLAEFG KKRARIAEKG SELNAHEAKL GIIEIKLESR 240 YQCAACKKGF HSYQALGGHR ASHKRIRGCC FQNPNANFDD KTEAYVEHLT VVEMEHSYSG 300 LSKKSRIHEC SICGKIFSSG QALGGHKRSH LVSTADASSC GDNAAAVAVT AAAVAVTVAA 360 AVEVPELLDL NLPAPVDDES SNVKPWWSGE SIEHEQNSIN LIDF

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MEKHRCKICS KCFPCGRSLG GHMRSHMRFC SSVKEKEKLE NSSYVLRENP KKTGMLLDFA  60
GEDPTSSSSS LKTKQCKVCG KEFPSWKALF GHMRCHSNKI CRRSFEAEKQ EEDQEEEEEV  120
SWKHRSMLTS AASSITEYEQ EQEEVAISLM MLSRDVGGYW SIAADSSDKQ SEVMEDDGLI  180
KRSEEFGGFD LEYSGEESGK QKIMTLAEFG KKRARIAEKG SELNAHEAKL GIIEIKLESR  240
YQCAACKKGF HSYQALGGHR ASHKRIRGCC FQNPNANFDD KTEAYVEHLT VVEMEHSYSG  300
LSKKSRIHEC SICGKIFSSG QALGGHKRSH LVSTADASSC GDNAAAVAVT AAAVAVTVAA  360
AVEVPELLDL NLPAPVDDES SNVKPWWSGE SIEHEQNSIN LIDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	5e-24	C2H2 family protein