PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020690256.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 244aa    MW: 27919 Da    PI: 6.3489
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020690256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.64.2e-2346132390
            FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     Y++YA+++GFsvrk++++   +++ i++++fvCsk g+++e+++  +k + +r+ trtgC a+++ + +++g w v+k ++ HnHela
  XP_020690256.1  46 YCQYAHSTGFSVRKDHHHFWPNTRLIKSKDFVCSKAGFKKENESG-TKLKYRRSCTRTGCPAMVRFSVSQEGLWSVKKSVESHNHELA 132
                     99****************************************999.999999**********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MEGSNEGSGF EDFMFCEETQ TLSYDEAFSD LILGVYSSEK EAYAKYCQYA HSTGFSVRKD  60
HHHFWPNTRL IKSKDFVCSK AGFKKENESG TKLKYRRSCT RTGCPAMVRF SVSQEGLWSV  120
KKSVESHNHE LARPDDQHLL RSARSISEDN SSVLKSMTEA GIRTVDAFTY LSDEVGGVAN  180
LGFTKRDAYN HIQKERRAKF ESGDTNSLIK LFKERAIDDH MFAWDVETDE DGCLLNEKHD  240
QRPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-28FAR1 family protein