PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020690297.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 278aa    MW: 31629 Da    PI: 10.8403
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020690297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.59.5e-2031120186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++e+l Lie +r+++++lr g+l++++W ev++ +    ++ +f   ++++qC++k e+l+kr++ ++ ++++   ++ss +p+f+ +e
  XP_020690297.1  31 CWSHDETLSLIESYRDKWHSLRCGNLRAADWGEVAADVsrrcSHLPFatPKTSVQCRHKVEKLRKRFRSERLRSGNL--RRSSPWPFFHIME 120
                     8********************************999997766555554489*******************9999996..66778*****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MAFSSQQTSA AAAGEYSPAS LPSRPGFPPP CWSHDETLSL IESYRDKWHS LRCGNLRAAD  60
WGEVAADVSR RCSHLPFATP KTSVQCRHKV EKLRKRFRSE RLRSGNLRRS SPWPFFHIME  120
SLYHRPHSDS DSGTAGNTRS SDHRRMPNGG QGLQFTIPKA LRSKIVNPCS GGGRVSKSSM  180
QEIRRRVEMT RIEERERKKE REGDAVGDMI AALRKLGDGY MRMERMKMDM ARETERFRME  240
MELKRTEAML DLHSQIVDAF AKRFAGSVNK KAKLSPSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-27Trihelix family protein