PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020690312.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GATA

Protein Properties

Length: 580aa MW: 64728.6 Da PI: 7.2065

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020690312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	44.8	1.7e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t TplWR+gp ++ LCnaCG ++r kg+ XP_020690312.1 7 CRHCGVTCTPLWRNGPPEKPVLCNACGSRWRTKGS 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MAKHGPCRHC GVTCTPLWRN GPPEKPVLCN ACGSRWRTKG SLANYTPLHA RELSEWEEPK 60 VVKMKNISLK SKEHRLNKRK QMHGIVENEC EMRFSELDQN YVRTFEGNAS NRSSSGSAIS 120 YSESCANFGV ADASDLTGSA QSNALDSSLV PVPSKKRSVK HPKPSPVEKL TKVLCSFWHE 180 QQSSNLSGSS EEDLLFERDI TRSSVEIGHG GVLLRYPSYK PIEEESEASS LPADNKLISE 240 AYSRSASFPV ISESKRTRSS DAAIDKIENS TVHMSQEHAK SESVSPQNLS MLEDRDSPLR 300 FVDLKDVVSL EVFMKYLTND EQQRLMKYLP SIDTAMPCES LKSMFSSPLF MENLSYFQQL 360 LQDGVFDLSF CHMSVGECRA LKLALLNSLK SGWVDHYGKV KDVKRQQSAV ANGGENSANF 420 LLRYNLAPSK RTRQIQNGHM QDSKRIMRSP KIVYRSSNTK SPSTKSSVLN PTEKESKEML 480 DADGLVGNEG ACVSPRSLFA WPPYPSSEFQ FTDDSSDQDL LLNVRCSSSF PEAELLLHHP 540 CNEKTSSNSS RAESCVATEE ESLCNYPASS FSSQQLNHHK

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MAKHGPCRHC GVTCTPLWRN GPPEKPVLCN ACGSRWRTKG SLANYTPLHA RELSEWEEPK  60
VVKMKNISLK SKEHRLNKRK QMHGIVENEC EMRFSELDQN YVRTFEGNAS NRSSSGSAIS  120
YSESCANFGV ADASDLTGSA QSNALDSSLV PVPSKKRSVK HPKPSPVEKL TKVLCSFWHE  180
QQSSNLSGSS EEDLLFERDI TRSSVEIGHG GVLLRYPSYK PIEEESEASS LPADNKLISE  240
AYSRSASFPV ISESKRTRSS DAAIDKIENS TVHMSQEHAK SESVSPQNLS MLEDRDSPLR  300
FVDLKDVVSL EVFMKYLTND EQQRLMKYLP SIDTAMPCES LKSMFSSPLF MENLSYFQQL  360
LQDGVFDLSF CHMSVGECRA LKLALLNSLK SGWVDHYGKV KDVKRQQSAV ANGGENSANF  420
LLRYNLAPSK RTRQIQNGHM QDSKRIMRSP KIVYRSSNTK SPSTKSSVLN PTEKESKEML  480
DADGLVGNEG ACVSPRSLFA WPPYPSSEFQ FTDDSSDQDL LLNVRCSSSF PEAELLLHHP  540
CNEKTSSNSS RAESCVATEE ESLCNYPASS FSSQQLNHHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	2e-84	GATA family protein