PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020690328.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 217aa MW: 23465.3 Da PI: 4.7449

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020690328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.6	1.2e-55	32	136	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q +e+a dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rsw+haeenkrrtl+k+diaaa+trtdifdfl XP_020690328.1 32 QLHMFWTYQrqeMEQAGDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWIHAEENKRRTLQKNDIAAAITRTDIFDFL 126 799**99889******************************************************************************* PP NF-YC 93 vdivprdelk 102 vdivpr+++k XP_020690328.1 127 VDIVPREDIK 136 ****9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MEQNQQAGSS SAQGYPQPQT SFHQLLQQQH QQLHMFWTYQ RQEMEQAGDF KNHQLPLARI 60 KKIMKADEDV RMISAEAPIL FAKACELFIL ELTIRSWIHA EENKRRTLQK NDIAAAITRT 120 DIFDFLVDIV PREDIKEVVA AAPLGGEGAA AAGVPYYYST MGATGMYVGQ PPGMGWWGEE 180 DGSGGFGGGG GGGGVEVVQG YGVAGDQPTA PAPPPGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	111	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	4e-69	NF-YC family protein