PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020690331.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 183aa MW: 19592.2 Da PI: 4.5082

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020690331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.3	1.3e-54	1	102	4	102
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 +fw++q +e+a dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rsw+haeenkrrtl+k+diaaa+trtdifdflvdi XP_020690331.1 1 MFWTYQrqeMEQAGDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 95 699988888************************************************************************************ PP NF-YC 96 vprdelk 102 vpr+++k XP_020690331.1 96 VPREDIK 102 *9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MFWTYQRQEM EQAGDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFAKA CELFILELTI 60 RSWIHAEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRED IKEVVAAAPL GGEGAAAAGV 120 PYYYSTMGAT GMYVGQPPGM GWWGEEDGSG GFGGGGGGGG VEVVQGYGVA GDQPTAPAPP 180 PGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-69	NF-YC family protein