PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020690376.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 480aa MW: 50176.1 Da PI: 9.03

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020690376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_020690376.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	11.5	0.00095	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C k + +s+ k H +t+ XP_020690376.1 144 WKCDKCLKKYAVQSDWKAHAKTC 166 58******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MPVEFEGSSV MTMSNSASGE TSVSSGHLAA AASLLPPPKK KRNLPGMPDP DAEVIALSPK 60 TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT GKEVKKRVYV CPEPSCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCL KKYAVQSDWK AHAKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAEESA RTQTNAVAVA AEKESKLAVT APANLQEKQM APPPPPSDQK 240 GILQYLPQPP LAPVSMSMNC SNSSCTTTSC GSSSLFASTV ATQRTSFSDL IGSMSRPEVE 300 PPSLCLSSNG PSSLFPPAPD RRQFPALQPS AHMSATALLQ KAAQMGAAAS GSSFLRGFGL 360 AASTSPLAAG GGGEAQWPEP ASMSAGLGLG LPYDSGCAAA GLPDMMMGSA ALFGSKPAAT 420 LDFLGLGPSG GANAGGLSAF INSIGGGGLE AYSSGRSSSP VKTWDGGGGG DVKANGRAIL

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MPVEFEGSSV MTMSNSASGE TSVSSGHLAA AASLLPPPKK KRNLPGMPDP DAEVIALSPK  60
TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT GKEVKKRVYV CPEPSCVHHD  120
PSRALGDLTG IKKHFCRKHG EKKWKCDKCL KKYAVQSDWK AHAKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAEESA RTQTNAVAVA AEKESKLAVT APANLQEKQM APPPPPSDQK  240
GILQYLPQPP LAPVSMSMNC SNSSCTTTSC GSSSLFASTV ATQRTSFSDL IGSMSRPEVE  300
PPSLCLSSNG PSSLFPPAPD RRQFPALQPS AHMSATALLQ KAAQMGAAAS GSSFLRGFGL  360
AASTSPLAAG GGGEAQWPEP ASMSAGLGLG LPYDSGCAAA GLPDMMMGSA ALFGSKPAAT  420
LDFLGLGPSG GANAGGLSAF INSIGGGGLE AYSSGRSSSP VKTWDGGGGG DVKANGRAIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-112	C2H2 family protein