PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020690485.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 368aa    MW: 42707.4 Da    PI: 9.7625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020690485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.6e-20411221098
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++++ +v+pkkf+e+++g+     t+ l+ +sg  W v+l  +k+ +++vl  GWk Fv+a g++e+D++vFk+dg s+f  +v +f+
  XP_020690485.1  41 DFSKC-MVIPKKFIENFNGE--LLETVELKAPSGDIWHVEL--KKTNDGVVLDCGWKYFVEAYGIQENDTLVFKYDGCSSF--LVLMFE 122
                     44555.********888777..6679***************..********************************987777..887776 PP
2B349.57.6e-16272359190
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     f+++++p +  k+  +++p  fa +h   +++s  + l+ ++  r W+v +    + +++ +t+GWk+Fv+ n+Lk gD+++F+l ++ ++ 
  XP_020690485.1 272 FVSIMVPCSIVKRFYMTIPIAFAMKHL--PRTSNRVFLRVPDEqRLWQVHC--LVQARSVGFTSGWKNFVRGNHLKIGDICLFELLETqKDI 359
                     7889999999*************9995..34666899999776699*****..88888899***********************98764554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MGMECRYCEK WKEQCRKFEE HFYWGHVDVR RMHFSKFMTG DFSKCMVIPK KFIENFNGEL  60
LETVELKAPS GDIWHVELKK TNDGVVLDCG WKYFVEAYGI QENDTLVFKY DGCSSFLVLM  120
FEQSGCEKPA SHRLKKGDPM DNLCAIPSVK RARNDSSVSS YGHTEQEQPI TSQHRNSRAN  180
RSAEKNQVRV RKNSRRIYRP KNPLIASRKK KAAREDERCI IKAIENPANE VSLDELCSAN  240
MYFVSRKARV SDAEKKKLLS FAKSIQTDKP SFVSIMVPCS IVKRFYMTIP IAFAMKHLPR  300
TSNRVFLRVP DEQRLWQVHC LVQARSVGFT SGWKNFVRGN HLKIGDICLF ELLETQKDIL  360
MAVHINRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-37B3 family protein