PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020690487.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 367aa MW: 42578.3 Da PI: 9.8411

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020690487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.5	6.6e-20	41	122	10	98
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++ +v+pkkf+e+++g+ t+ l+ +sg W v+l +k+ +++vl GWk Fv+a g++e+D++vFk+dg s+f +v +f+ XP_020690487.1 41 DFSKC-MVIPKKFIENFNGE--LLETVELKAPSGDIWHVEL--KKTNDGVVLDCGWKYFVEAYGIQENDTLVFKYDGCSSF--LVLMFE 122 44555.******888777..6679***********..******************************987777..887776 PP
2	B3	49.5	7.6e-16	271	358	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f+++++p + k+ +++p fa +h +++s + l+ ++ r W+v + + +++ +t+GWk+Fv+ n+Lk gD+++F+l ++ ++ XP_020690487.1 271 FVSIMVPCSIVKRFYMTIPIAFAMKHL--PRTSNRVFLRVPDEqRLWQVHC--LVQARSVGFTSGWKNFVRGNHLKIGDICLFELLETqKDI 358 7889999999***********9995..34666899999776699*..88888899*********************98764554 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MGMECRYCEK WKEQCRKFEE HFYWGHVDVR RMHFSKFMTG DFSKCMVIPK KFIENFNGEL 60 LETVELKAPS GDIWHVELKK TNDGVVLDCG WKYFVEAYGI QENDTLVFKY DGCSSFLVLM 120 FEQSGCEKPA SHRLKKGDPM DNLCAIPSVK RARNDSSVSS YGHTEQEQPI TSQHRNSRAN 180 RSAEKNQVRV RKNSRRIYRP KNPLIASRKK KAARDERCII KAIENPANEV SLDELCSANM 240 YFVSRKARVS DAEKKKLLSF AKSIQTDKPS FVSIMVPCSI VKRFYMTIPI AFAMKHLPRT 300 SNRVFLRVPD EQRLWQVHCL VQARSVGFTS GWKNFVRGNH LKIGDICLFE LLETQKDILM 360 AVHINRI

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MGMECRYCEK WKEQCRKFEE HFYWGHVDVR RMHFSKFMTG DFSKCMVIPK KFIENFNGEL  60
LETVELKAPS GDIWHVELKK TNDGVVLDCG WKYFVEAYGI QENDTLVFKY DGCSSFLVLM  120
FEQSGCEKPA SHRLKKGDPM DNLCAIPSVK RARNDSSVSS YGHTEQEQPI TSQHRNSRAN  180
RSAEKNQVRV RKNSRRIYRP KNPLIASRKK KAARDERCII KAIENPANEV SLDELCSANM  240
YFVSRKARVS DAEKKKLLSF AKSIQTDKPS FVSIMVPCSI VKRFYMTIPI AFAMKHLPRT  300
SNRVFLRVPD EQRLWQVHCL VQARSVGFTS GWKNFVRGNH LKIGDICLFE LLETQKDILM  360
AVHINRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-37	B3 family protein