PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020690568.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YB
Protein Properties Length: 215aa    MW: 23330.7 Da    PI: 8.8305
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020690568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.72.2e-5528123297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdrflPianvsrimk+ lPanakisk+aketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGf+ yv pl++yl++yre eg+
  XP_020690568.1  28 KEQDRFLPIANVSRIMKRSLPANAKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMSTLGFDSYVVPLRTYLNRYRESEGD 122
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_020690568.1 123 K 123
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MKRSRKSTSQ QSPASSPQSD ADMSGSSKEQ DRFLPIANVS RIMKRSLPAN AKISKEAKET  60
VQECVSEFIS FVTGEASDKC QREKRKTING DDLLWAMSTL GFDSYVVPLR TYLNRYRESE  120
GDKNCMARQQ EPENVSGDRD QSLSFEDGSG VTNEVLAATA AAAARFDGGF YNPAPGFGGG  180
RGFLRKNGSG AHDGGQGGGR PAFPGQFHGS RWNPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-60NF-YB family protein