PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020690609.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 184aa MW: 20924.8 Da PI: 4.9031

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020690609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H XP_020690609.1 69 YPCSFCGRDFRSAQALGGHMNVH 91 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MEEAQYLMWA RKKQPIDHQL DLFNSPPIAL RLTSMSSSMI DSRSWEEKAF AEDSAGILGG 60 GCIWPPRSYP CSFCGRDFRS AQALGGHMNV HRRDRARLKQ SSIVEEEDEA EDLVNPSLIP 120 NFGEEMRLDE VDLIRLMKRD LDGEEDEIKG SCKKKKKKNS SMSPADIVEE LDLELRLGDL 180 PKVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	184	KKKKKNSSMSPADIVEELDLELRLGDLPKVK
2	155	185	KKKKKNSSMSPADIVEELDLELRLGDLPKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	1e-27	C2H2 family protein