PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020690965.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 220aa    MW: 25177 Da    PI: 6.4344
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020690965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.98.1e-1961145290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     ++++YA++ GFsvrk++++         +++f Csk  +++++ ++  +++r tr++ rtgC a+++   ++dg w+v+++ + HnHela
  XP_020690965.1  61 CFCTYAHDNGFSVRKDHHSFW-----PNSKDFFCSKASFKKSDYHNsGKRKRFTRPVVRTGCPAMVRFITDEDGYWHVKRFIESHNHELA 145
                     799**************9998.....4568**********9998884566677***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MDCSAKREVE EGMEEGGHES ERMHESEGLV HESESEPNLA ENSSGFNISA VYKDETEAYE  60
CFCTYAHDNG FSVRKDHHSF WPNSKDFFCS KASFKKSDYH NSGKRKRFTR PVVRTGCPAM  120
VRFITDEDGY WHVKRFIESH NHELASPADR HLLRSCRNII EKKASVLKSM TDAGIRTVDA  180
YAYLAEEVGG CENVGFSKRD AYNFIQKEKR ARIEIGDTII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-17FAR1 family protein