PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020690977.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 405aa MW: 44848.5 Da PI: 8.7153

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020690977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	61	81	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_020690977.1 61 CEICGKGFQRDQNLQLHRRGH 81 *******************88 PP
2	zf-C2H2	13.4	0.00022	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ XP_020690977.1 135 WKCDKCSKRYAVQSDWKAHAKVC 157 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MDHTMAGEPT SMALPSNLHQ DPNTLPLMIK KKRNLPGTPD PEAEVIALSP KTLMATNRFL 60 CEICGKGFQR DQNLQLHRRG HNLPWKLRQK SSKEPRKRVY VCPEKSCIHH NPLRALGDLT 120 GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHAKVCGTR EYRCDCGTIF SRRDSFITHR 180 AFCDALAEEA ARISASSNIN NTVSITNMIN YPCFNPNLTR PALQPLPEVP GLSFWMNQES 240 NEAMAYPNLS PYSSGLLSSC SNAEQLESQL NWIYNESKLP APSNGGELPI KEPCNNSSLG 300 CMPFLLSTQR EHRPMPVPDM SATSLLQKAA QMGVVSSTGP SLLVGFDMKS TLVGDLPPPP 360 QPAMASLYNV HKYDIGVGRD GGEITRDFLG VGVQALCPSS VSGWI

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MDHTMAGEPT SMALPSNLHQ DPNTLPLMIK KKRNLPGTPD PEAEVIALSP KTLMATNRFL  60
CEICGKGFQR DQNLQLHRRG HNLPWKLRQK SSKEPRKRVY VCPEKSCIHH NPLRALGDLT  120
GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHAKVCGTR EYRCDCGTIF SRRDSFITHR  180
AFCDALAEEA ARISASSNIN NTVSITNMIN YPCFNPNLTR PALQPLPEVP GLSFWMNQES  240
NEAMAYPNLS PYSSGLLSSC SNAEQLESQL NWIYNESKLP APSNGGELPI KEPCNNSSLG  300
CMPFLLSTQR EHRPMPVPDM SATSLLQKAA QMGVVSSTGP SLLVGFDMKS TLVGDLPPPP  360
QPAMASLYNV HKYDIGVGRD GGEITRDFLG VGVQALCPSS VSGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-117	C2H2 family protein