PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691074.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 237aa MW: 27283.6 Da PI: 6.6677

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++lvd + G ++W+++++ g+ R++k+c++rw +yl XP_020691074.1 14 RGSWTAEEDQKLVDFILNNGIHCWRLVPKLAGLMRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	44.8	2.8e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++ E++++++++ lG++ W++Ia++++ gRt++++k+ w++ XP_020691074.1 67 RGALSETEEQQIIKLHSNLGNR-WSKIASHFP-GRTDNEIKNIWNT 110 78889***************.*****.*******9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRQPCCDKE RVKRGSWTAE EDQKLVDFIL NNGIHCWRLV PKLAGLMRCG KSCRLRWINY 60 LRPDLKRGAL SETEEQQIIK LHSNLGNRWS KIASHFPGRT DNEIKNIWNT TIKKKLKLQS 120 SDQLTAKNNE ADRKKLISKI EDKGLVIETS TESSKSSSFQ ELEQNWTQEM KLIQANLSIS 180 CSASTSMEGN VNPSSWEGES NVHGESDELF WADTIDYSSS WDAYNFVDDF LHYENYP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	1e-59	MYB family protein