PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691152.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 287aa MW: 32412.7 Da PI: 6.4168

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.5	1.8e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++++G g+W++ ++ g++R++k+c++rw +yl XP_020691152.1 14 KGPWTPEEDQKLVHYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.7	2.3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia ++ gRt++++k++w+++l XP_020691152.1 67 RGKFSPEEEQTILNLHSILGNK-WSAIATHLS-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MGRSPCCDEN GLKKGPWTPE EDQKLVHYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPEEEQTILN LHSILGNKWS AIATHLSGRT DNEIKNYWNT HLKKKLIQMG 120 FDPMTHQPRT DFTAALPHLL ALANLVDHRP PTWLDSLKAE AAKLQFLQYF LQSAPSNTGF 180 ESIDSFLNPQ PLSSYPIEQN IGNQPPLLEL PMSYDYQSLL SNENLNYDES KLPLMESPIS 240 TLPPLIDMSN PGDACSTSSC EGRGNSTSAT SFWPEFLLDD SFMNELP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-91	MYB family protein