PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691197.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 387aa MW: 43904.5 Da PI: 6.7832

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.3	1.6e-26	61	126	2	67
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W ++e+l+Li++rrem++ ++++k++k+lWe++s+kmre+gfersp++C++kw+nl k+ykk k++ XP_020691197.1 61 WVQDETLCLIAFRREMDRLFNTSKSNKHLWEQISAKMREKGFERSPTMCTDKWRNLLKEYKKAKHH 126 ***************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MSIPLTLEQL LAGGDFPFSR RREEDQLEES RKRMAMSESS CGDDQEVRTH GPNPKKRAET 60 WVQDETLCLI AFRREMDRLF NTSKSNKHLW EQISAKMREK GFERSPTMCT DKWRNLLKEY 120 KKAKHHCRVS GGTGGGVGGG LAKTACYKEL EELLKERGHK NLACKGCVSL KRVDSFMQFA 180 EKGLEDVNLL FGPTEGTGRS ALNQDRHLDH ERDSLAITAA DAVTPNGIPP WSWKDNSANG 240 EDNHSSYLGR VILVKLGEYS RKIGIDGTSE SIKEAIKAAF GLRTRRAFWL EDEDEVVRSL 300 DRDMPLGTYT IHLDEGVTVK FCVYDDSNRL SVRTEEKTLY TQEDFNEFLT RRCWTSLREI 360 NSLRTADTLD DLQPGAVYQG LPVTRAI

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MSIPLTLEQL LAGGDFPFSR RREEDQLEES RKRMAMSESS CGDDQEVRTH GPNPKKRAET  60
WVQDETLCLI AFRREMDRLF NTSKSNKHLW EQISAKMREK GFERSPTMCT DKWRNLLKEY  120
KKAKHHCRVS GGTGGGVGGG LAKTACYKEL EELLKERGHK NLACKGCVSL KRVDSFMQFA  180
EKGLEDVNLL FGPTEGTGRS ALNQDRHLDH ERDSLAITAA DAVTPNGIPP WSWKDNSANG  240
EDNHSSYLGR VILVKLGEYS RKIGIDGTSE SIKEAIKAAF GLRTRRAFWL EDEDEVVRSL  300
DRDMPLGTYT IHLDEGVTVK FCVYDDSNRL SVRTEEKTLY TQEDFNEFLT RRCWTSLREI  360
NSLRTADTLD DLQPGAVYQG LPVTRAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-144	Trihelix family protein