PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020691257.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22409.5 Da    PI: 4.6116
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020691257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.5e-181459348
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    +e k  r v fskRr+g++KKA ELS+L +a++  i+fs+ +kly+
  XP_020691257.1 14 VEKKESRLVCFSKRRTGLFKKARELSTLSGAKIGAIVFSPADKLYT 59
                    688999***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MVGRGRQKTE LKLVEKKESR LVCFSKRRTG LFKKARELST LSGAKIGAIV FSPADKLYTM  60
EAPTLDSLLG CLKENESDST TKSEFVDVTN GKEAPFWWDI PQVEAMSYEE LLQFQRALLD  120
YSERKFGKLE NFKERLLQGK QQESDERILL NPPTFYGDDS TDPNLKMDTL ASIFDPTLSF  180
DEQWLQCVDD WLMEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-17M-type_MADS family protein