PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691594.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 364aa MW: 42293.9 Da PI: 6.0441

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.8	6e-23	78	175	1	86
trihelix 1 rWtkqevlaLiearr...........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++L++++ e r r+ +kk++W+ vsk m+e+g+ +sp+qC++k+++lnkryk+++e+ +++ t++++++ ++++ XP_020691594.1 78 KWTDEMVRLLVAVVAfvndegtpdpvEAAARRRSVLQKKGKWKTVSKLMMEKGCYVSPQQCEDKFNDLNKRYKRLNEILGRGtTCTVVENPALLE 172 7************666666666544444444455******************************************77*******99 PP trihelix 84 qle 86 +++ XP_020691594.1 173 SMT 175 997 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MDNSAIASHL LPRSSSITLD LDPLINVCHH RPNDLKAPPV DPNPHILQIP GAFPSDEDDD 60 SFALGDRTKL ESQWHRMKWT DEMVRLLVAV VAFVNDEGTP DPVEAAARRR SVLQKKGKWK 120 TVSKLMMEKG CYVSPQQCED KFNDLNKRYK RLNEILGRGT TCTVVENPAL LESMTHVSFK 180 MKEDVRKILN SKHLFYREMC AYHNGQRIPD SQIFGLRNEI LTSSGILHEV NEDSEDVDDD 240 EGKSDDYGQL GVDDFLAEID LVFQDNNRTA SEKLDWFQRR ALQIKQERLA ILAEALELEK 300 RNFKWQRFRS KKDREMEKMK LENERSMKEN ERKILELRQK ELEFTPSRLK EVRDAAANRM 360 DVEH

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MDNSAIASHL LPRSSSITLD LDPLINVCHH RPNDLKAPPV DPNPHILQIP GAFPSDEDDD  60
SFALGDRTKL ESQWHRMKWT DEMVRLLVAV VAFVNDEGTP DPVEAAARRR SVLQKKGKWK  120
TVSKLMMEKG CYVSPQQCED KFNDLNKRYK RLNEILGRGT TCTVVENPAL LESMTHVSFK  180
MKEDVRKILN SKHLFYREMC AYHNGQRIPD SQIFGLRNEI LTSSGILHEV NEDSEDVDDD  240
EGKSDDYGQL GVDDFLAEID LVFQDNNRTA SEKLDWFQRR ALQIKQERLA ILAEALELEK  300
RNFKWQRFRS KKDREMEKMK LENERSMKEN ERKILELRQK ELEFTPSRLK EVRDAAANRM  360
DVEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	4e-58	Trihelix family protein