PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020691604.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 361aa    MW: 40250 Da    PI: 7.7946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020691604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13288333655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  XP_020691604.1 288 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 333
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MYGSPSAAAT KELNLPFSRR KEESDLQRQQ QMSSGLLRYR SAPSSLLGEV CENFLPVRPS  60
SPETESMFAR FLSPDLREEI REKPAAVERN LHFKPSPETE QNGGFSCAPP QMFYHSQHQQ  120
SMADGANLIR QSSSPAGFFS HLNVDNGYGL MRGMTGGIKG QISFSSRQNS LSQISEMESD  180
GISGDHESPV ENSNGRCLIP GYAVSSWEDS LLSDSFSGYK RSRDIVGLNQ TELQEGDVKN  240
NQVSGLTHQF SLPKTSSEIA AIEKFLQFQD SVPCKIRAKR GCATHPRSIA ERVRRTRISE  300
RMRKLQELVP NMDKQTNTAD MLDLAVDYIK DLQRQVKTLT DSKATCTCSD SKQKTYQNPT  360
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-69bHLH family protein