PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691641.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 227aa MW: 25519.8 Da PI: 8.3497

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l +++ +G+g +W + +++ g++R++k+c++rw++yl XP_020691641.1 14 RGPWSPEEDAALRSYIQNHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	43.5	7.3e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd+ + + + G++ W+ Ia++++ gRt++++k++w++ XP_020691641.1 69 GCFTKEEDDMIFTLYSKIGSR-WSVIASKLP-GRTDNDVKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAALRSYIQ NHGSGGNWIA LPKKAGLKRC GKSCRLRWLN 60 YLRPDIKHGC FTKEEDDMIF TLYSKIGSRW SVIASKLPGR TDNDVKNYWN TKLKKRMMEA 120 QATLSDNHSA APSQPVVPRV HSSAFINCVS IRPTDQTESQ SFINGSLGES LDLRVPRQNP 180 NYLELDFGSI ADLFYSSSYE ETIGTMWADA SEEIKLGEPS QSVTYLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-71	MYB family protein