PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691800.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 474aa MW: 51617.1 Da PI: 7.8173

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	7.8e-41	176	252	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dl ak+yhr+h+vCe hsk+p+v+++g+e+rfCqqCsrfh+lsefD++krsCr+rL++hn+rrrk+q+ XP_020691800.1 176 CQVEGCNIDLIGAKDYHRKHRVCENHSKSPKVIIAGQERRFCQQCSRFHDLSEFDQKKRSCRKRLSEHNSRRRKPQP 252 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MDWNLKAPLQ WEWENLALFS GKENEITKFT TQVEWRAEDG GVISNGSVYS SGSGTSSGSE 60 LGNGSSKSSI SASVGSSSKV GATISELNFE AIEGLHQNLN KNNMPFRGED TGTSPVIVGR 120 SGAGEPPIGL KLGKRTYFED FGTANVKTSS VSITPDDPSS VKKSRLSHQA SQNTYCQVEG 180 CNIDLIGAKD YHRKHRVCEN HSKSPKVIIA GQERRFCQQC SRFHDLSEFD QKKRSCRKRL 240 SEHNSRRRKP QPEAISFNSP VLPSSFYANG QQMNFFLSRG PVSNVRPSAS SLWEKSSGFS 300 LSTTEGSWPK PTKASVDGAL HLPFMDFSDT FPASHHGFNR TIPFKGTTAE VLSQGLEASV 360 STSNLNGAPD LRSALSLLSN DSCGPCNTGQ SNMIQFARTN PTVASHPPVP ASTSLPECWH 420 DDHSLTEQAL AFNFNGSGSH FQEFHLSKAP FDSPLFESNQ VFSKSDGHFL GFKT

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MDWNLKAPLQ WEWENLALFS GKENEITKFT TQVEWRAEDG GVISNGSVYS SGSGTSSGSE  60
LGNGSSKSSI SASVGSSSKV GATISELNFE AIEGLHQNLN KNNMPFRGED TGTSPVIVGR  120
SGAGEPPIGL KLGKRTYFED FGTANVKTSS VSITPDDPSS VKKSRLSHQA SQNTYCQVEG  180
CNIDLIGAKD YHRKHRVCEN HSKSPKVIIA GQERRFCQQC SRFHDLSEFD QKKRSCRKRL  240
SEHNSRRRKP QPEAISFNSP VLPSSFYANG QQMNFFLSRG PVSNVRPSAS SLWEKSSGFS  300
LSTTEGSWPK PTKASVDGAL HLPFMDFSDT FPASHHGFNR TIPFKGTTAE VLSQGLEASV  360
STSNLNGAPD LRSALSLLSN DSCGPCNTGQ SNMIQFARTN PTVASHPPVP ASTSLPECWH  420
DDHSLTEQAL AFNFNGSGSH FQEFHLSKAP FDSPLFESNQ VFSKSDGHFL GFKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	249	KKRSCRKRLSEHNSRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	9e-58	SBP family protein