PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691867.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 202aa MW: 23489.9 Da PI: 9.3686

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.1	5.5e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdae+ +i+fss+gklye+ss XP_020691867.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIGLIVFSSSGKLYEFSS 59 8***********************************************96 PP
2	K-box	72.3	1.5e-24	78	171	5	98
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ +e++ ++++++l+ ++ie L ++R+l+Ge+Les+s++eL++Le+qLe+sl++i+++Kn +l+e+i +l+ ke+elqeen L+++ XP_020691867.1 78 ENSRSTEQNIQQWKHDLEVKARKIELLDVSKRKLMGESLESCSVEELNELESQLEQSLSRIKKRKNLVLKEKITQLKDKERELQEENDLLKRQA 171 6667899***********************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MVRGKTEVRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEIGLIVFSS SGKLYEFSSS 60 SMLNTIERYK MHVKDMIENS RSTEQNIQQW KHDLEVKARK IELLDVSKRK LMGESLESCS 120 VEELNELESQ LEQSLSRIKK RKNLVLKEKI TQLKDKEREL QEENDLLKRQ ASRLASSLEI 180 VPQGDSHYKD VETELYIGWP GR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	7e-58	MIKC_MADS family protein