PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691876.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 357aa MW: 39003.1 Da PI: 9.2115

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.9	5.3e-42	83	158	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dl+ ak+y+ rhkvC +hsk+p+v+v+gleqrfCqqCsrfh l+efD++krsCrrrLa+hnerrrk+ XP_020691876.1 83 RCQVEGCNLDLKGAKSYYCRHKVCGIHSKSPKVIVAGLEQRFCQQCSRFHLLKEFDQGKRSCRRRLAGHNERRRKP 158 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MLFRQSSSRT EMEKGSSSRA GGSGDAFKGL QFGRKIYFED GSGGESSSKP VAAPALPEMR 60 QVVAGKKAKG AAQGFGQPLP PPRCQVEGCN LDLKGAKSYY CRHKVCGIHS KSPKVIVAGL 120 EQRFCQQCSR FHLLKEFDQG KRSCRRRLAG HNERRRKPPP GLLPSRYEDN TRHRGFLMDF 180 MHPRPPDATK NILWPTMRSS DRVVTNQLQG SFQSSGVAMS NPLPALFSAP ELALGECIAG 240 VSDSTCALSL LSTHPWDSAT ASGTSRNHGD PVITPSIEFQ MAPANIPSSF MNSSWAFKGH 300 AVGSSSSHEM GLRQIRTTGN CQFSGELELA PQGNRHCPDD VSPNEVYDHL HDLHWPL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MLFRQSSSRT EMEKGSSSRA GGSGDAFKGL QFGRKIYFED GSGGESSSKP VAAPALPEMR  60
QVVAGKKAKG AAQGFGQPLP PPRCQVEGCN LDLKGAKSYY CRHKVCGIHS KSPKVIVAGL  120
EQRFCQQCSR FHLLKEFDQG KRSCRRRLAG HNERRRKPPP GLLPSRYEDN TRHRGFLMDF  180
MHPRPPDATK NILWPTMRSS DRVVTNQLQG SFQSSGVAMS NPLPALFSAP ELALGECIAG  240
VSDSTCALSL LSTHPWDSAT ASGTSRNHGD PVITPSIEFQ MAPANIPSSF MNSSWAFKGH  300
AVGSSSSHEM GLRQIRTTGN CQFSGELELA PQGNRHCPDD VSPNEVYDHL HDLHWPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	9e-49	SBP family protein