PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691884.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

E2F/DP

Protein Properties

Length: 413aa MW: 45346.6 Da PI: 8.3297

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.8	1.6e-27	157	239	2	71
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg XP_020691884.1 157 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnlaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 239 689******...*999***************************************************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MMQIPNLDNS PLNFTALSSS VGSEGTKTTE AWSRRRAPGF QLWRESVTTE MVSGTSHRPP 60 ENGDKGTGNC RKVVAGGRSS WGTPAFSGGQ SASTSGSAGS PSSRSEQAPA GTPASESTIA 120 RRIKHLEVNG DEAGSSQGAA SAKKKKRGTR AVAGDKSGRG LRQFSMKVCE KVESKGRTTY 180 NEVADELVAE FADPNNNLAS PDQQQYDEKN IRRRVYDALN VLMAMDIISK DKKEIQWKGL 240 PRTSLNDIEE LKAERASLKS RIEKKTAYLQ ELEDQIIGLQ NLIQRNEQLH GSENAPSGGV 300 ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD TYVLKAMRFC EREQQDGTHE 360 PISNGGECSS TQGIYRAQLP LLQWPSPRSK LPTSPPIPGI LKARVKHEQH HNQ

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MMQIPNLDNS PLNFTALSSS VGSEGTKTTE AWSRRRAPGF QLWRESVTTE MVSGTSHRPP  60
ENGDKGTGNC RKVVAGGRSS WGTPAFSGGQ SASTSGSAGS PSSRSEQAPA GTPASESTIA  120
RRIKHLEVNG DEAGSSQGAA SAKKKKRGTR AVAGDKSGRG LRQFSMKVCE KVESKGRTTY  180
NEVADELVAE FADPNNNLAS PDQQQYDEKN IRRRVYDALN VLMAMDIISK DKKEIQWKGL  240
PRTSLNDIEE LKAERASLKS RIEKKTAYLQ ELEDQIIGLQ NLIQRNEQLH GSENAPSGGV  300
ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD TYVLKAMRFC EREQQDGTHE  360
PISNGGECSS TQGIYRAQLP LLQWPSPRSK LPTSPPIPGI LKARVKHEQH HNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-128	E2F/DP family protein