PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691886.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 337aa MW: 36439.3 Da PI: 10.1401

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134	4.8e-42	83	158	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dl+ ak+y+ rhkvC +hsk+p+v+v+gleqrfCqqCsrfh l+efD++krsCrrrLa+hnerrrk+ XP_020691886.1 83 RCQVEGCNLDLKGAKSYYCRHKVCGIHSKSPKVIVAGLEQRFCQQCSRFHLLKEFDQGKRSCRRRLAGHNERRRKP 158 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MLFRQSSSRT EMEKGSSSRA GGSGDAFKGL QFGRKIYFED GSGGESSSKP VAAPALPEMR 60 QVVAGKKAKG AAQGFGQPLP PPRCQVEGCN LDLKGAKSYY CRHKVCGIHS KSPKVIVAGL 120 EQRFCQQCSR FHLLKEFDQG KRSCRRRLAG HNERRRKPPP GLLPSRYGGL SSFTEDNTRH 180 RGFLMDFMHP RPPDATKNIL WPTMRSSDRV VTNQLQGSFQ SSGVAMSNPL PALFSAPELA 240 LGECIAGVSD STCALSLLST HPWDSATASG TSRNHGDPVI TPSIEFQMAP ANIPSSFMNS 300 SWAFKGHAVG SSSSHEMGLR QIRTTGNCQF SDGISLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-50	SBP family protein