PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692056.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 356aa MW: 40346.9 Da PI: 6.9563

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692056.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	179	198	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_020692056.2 179 FSCPVCFKTFNRYNNMQMHM 198 89*****************9 PP
2	zf-C2H2	14	0.00015	263	285	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k F + + ++H +++ XP_020692056.2 263 FTCRKCNKAFAVRGDWRTHEKNC 285 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MTDPYTNFFK GYFNHYTFSS NSPPPPPAPY PHPFLNPNSS FYHNYYNYTN CNNNPPSSPP 60 QREALPLLRQ SPASSTLHHD EEEHKNKKNN NEGGLQNDQD AEEDEEAVTV ALHIGLPSPS 120 AADLISRVSC TQQVGEETEE VEEEVEVPLG YTENSIGKLN KGQYWIPTPS QILIGPTQFS 180 CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNIDHPR 240 SKPLKDFRTL QTHYKRKHGI KPFTCRKCNK AFAVRGDWRT HEKNCGKIWY CICGSDFKHK 300 RSLKDHIKAF GHGHAAYGID CFDEEEEPSS DIEQDGGAST GVQSCEGSNT VQPVRW

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MTDPYTNFFK GYFNHYTFSS NSPPPPPAPY PHPFLNPNSS FYHNYYNYTN CNNNPPSSPP  60
QREALPLLRQ SPASSTLHHD EEEHKNKKNN NEGGLQNDQD AEEDEEAVTV ALHIGLPSPS  120
AADLISRVSC TQQVGEETEE VEEEVEVPLG YTENSIGKLN KGQYWIPTPS QILIGPTQFS  180
CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNIDHPR  240
SKPLKDFRTL QTHYKRKHGI KPFTCRKCNK AFAVRGDWRT HEKNCGKIWY CICGSDFKHK  300
RSLKDHIKAF GHGHAAYGID CFDEEEEPSS DIEQDGGAST GVQSCEGSNT VQPVRW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-131	C2H2 family protein