PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692070.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 411aa MW: 45719.4 Da PI: 8.5316

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.3e-07	7	39	4	37
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37 W t+E+++l av ++G+ +W++Ia +++ +Rt+ XP_020692070.1 7 WGTWEELILGGAVLLHGTADWNAIATELQ-NRTD 39 ***************************.*7 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MALFSLWGTW EELILGGAVL LHGTADWNAI ATELQNRTDF PDLFTPQVCE AKYEDLQERY 60 SGCDAWFEEL RSQRVAELKK ELEKSVDSIG TLQSKLESLT AEKESDCNNL DYFTSRSQSI 120 SPADVANGAD YFCKEASIDG LSAGSFTRNT ERDWAPEIEI AASCSLQDDD YRIEMASNLC 180 ADFGSGNFRR KRDPRKRKPC NSFKEASVGE SETRREDSSE GCMPSSEKFC AVQQEEPVVD 240 LAGIVDSISK HKDVSILRYK IEKQKNSKYK KLIRRHVDLE TISSGISNGS ISSAKELFRD 300 LLLLCNNALV FHKRNSPKHK SAHSLRNIVM KNLRHTFHSP ISKPCEVDNK LQNGMAYKTF 360 IGRQALVAGK GAESPARKRG GGRPPKGSRR GGGGSPVESS SSTKGRKKVC R

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MALFSLWGTW EELILGGAVL LHGTADWNAI ATELQNRTDF PDLFTPQVCE AKYEDLQERY  60
SGCDAWFEEL RSQRVAELKK ELEKSVDSIG TLQSKLESLT AEKESDCNNL DYFTSRSQSI  120
SPADVANGAD YFCKEASIDG LSAGSFTRNT ERDWAPEIEI AASCSLQDDD YRIEMASNLC  180
ADFGSGNFRR KRDPRKRKPC NSFKEASVGE SETRREDSSE GCMPSSEKFC AVQQEEPVVD  240
LAGIVDSISK HKDVSILRYK IEKQKNSKYK KLIRRHVDLE TISSGISNGS ISSAKELFRD  300
LLLLCNNALV FHKRNSPKHK SAHSLRNIVM KNLRHTFHSP ISKPCEVDNK LQNGMAYKTF  360
IGRQALVAGK GAESPARKRG GGRPPKGSRR GGGGSPVESS SSTKGRKKVC R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	199	PRKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	6e-29	MYB_related family protein