PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692232.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21026.1 Da    PI: 4.68
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.63.3e-184691247
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     ie    r v fskRr+g++KKAeELS+L +a++ ++ fs+ gkly
  XP_020692232.1 46 LIEKAEARMVCFSKRRKGLFKKAEELSILSGAKIGILTFSQAGKLY 91
                    6899999**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MRFKNFYLCF SFSPEFCPLY DFPISVCKKV FIFMAGKGRK KLDNKLIEKA EARMVCFSKR  60
RKGLFKKAEE LSILSGAKIG ILTFSQAGKL YCSDAEIMNS LLCSQVDIPQ EKEIEVDWES  120
AFAEDMTADA HFYSQFDSYP EKDVEEDALN SASVEAMVEE LYCSNTIADS LLRREFEISR  180
EKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.33e-14MIKC_MADS family protein