PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692239.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26475.3 Da    PI: 9.3848
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.6e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien +nrqvt+skRr gilKKA+EL vLCda+v++i+fsstgkl +y+s
  XP_020692239.1  9 KKIENPTNRQVTYSKRRVGILKKAKELTVLCDAQVSLIMFSSTGKLADYCS 59
                    68***********************************************96 PP
2K-box79.86.7e-2772169299
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     q  +g +l++a++e++q+ l+ L++ ++nL++e+R+++Ge+Le +++keL+ Leq Le+sl+ +R++K++++ +q+++ +kk k+++e+ +aL +
  XP_020692239.1  72 QVVTGMDLWNAQYERMQNTLKHLNEINQNLRKEIRQRKGEELEGMEIKELRGLEQTLEESLRIVRQRKYHVIATQTDTYKKKLKSTRETYRALVH 166
                     5567889**************************************************************************************99 PP

           K-box  97 kle 99 
                     +le
  XP_020692239.1 167 ELE 169
                     876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MGRGKIEIKK IENPTNRQVT YSKRRVGILK KAKELTVLCD AQVSLIMFSS TGKLADYCSP  60
STDIKGVYER YQVVTGMDLW NAQYERMQNT LKHLNEINQN LRKEIRQRKG EELEGMEIKE  120
LRGLEQTLEE SLRIVRQRKY HVIATQTDTY KKKLKSTRET YRALVHELEM KDDNPNYAFS  180
AENHNRVYEN SIPMVNDCPQ MFSFRVVQPI QPNLLGIGYE SHDLSLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-65MIKC_MADS family protein