PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692442.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 254aa MW: 29164.8 Da PI: 7.3395

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.7e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llv +++ G g W+++++ g +R++k+c++rw++yl XP_020692442.1 14 KGAWTALEDKLLVSYITAAGEGKWRSVPKQAGIKRCGKSCRLRWLNYL 61 79****************************55**********97 PP
2	Myb_DNA-binding	53.1	7.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_020692442.1 67 RGNISEEEEDLIIRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNTT 111 7899****************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MEKKPCNNGD GLNKGAWTAL EDKLLVSYIT AAGEGKWRSV PKQAGIKRCG KSCRLRWLNY 60 LRPNIKRGNI SEEEEDLIIR LHKLLGNRWA LIAGRLPGRT DNEIKNYWNT TLSKKVRTQN 120 FAINKPNNKP WGHNSKPQQN ATSSTSIPTL IQTKPLRCTK ASHPYFPLQI PSSIDGVDQT 180 QQIIQQNFGD EIMEEEKKES AMVNNNDLLF FYDAMWTDEL EFENWSKGGD DYDGILCNDD 240 WFYGSSDTDI WQNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-58	MYB family protein