PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692570.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27856.7 Da    PI: 9.9522
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.5e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rienk++rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gklyeys+
  XP_020692570.1 10 RIENKIKRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSNKGKLYEYST 59
                    8***********************************************96 PP
2K-box92.85.7e-31881721498
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++ +   ++kLk ++e+Lqr+qR+l+Ge+L++L+ keLq+LeqqLe+slk+iRs+K++l+l++i+elq+kek+l+e++k++++ +
  XP_020692570.1  88 QADWGLAYSKLKTRVESLQRSQRNLMGEELDTLNNKELQHLEQQLESSLKNIRSRKTDLMLNSISELQNKEKMLKEQKKNMEEII 172
                     56788899**********************************************************************9988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGRVQLRR IENKIKRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFSN KGKLYEYSTD  60
SSMDKILERY ESYTYAERAI FSSEADPQAD WGLAYSKLKT RVESLQRSQR NLMGEELDTL  120
NNKELQHLEQ QLESSLKNIR SRKTDLMLNS ISELQNKEKM LKEQKKNMEE IIAKAKAKAL  180
AQNAAWEQQN RAPYNSSPHH VMISDSIATP TSRNCQTRYN AEEATQGELR LGKGLLPSWM  240
LSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-66MIKC_MADS family protein