PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692709.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26177.5 Da    PI: 8.0566
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692709.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g++KKAeELS+LCdaev +i+fsstgkl+e+ss
  XP_020692709.1 10 KINNATARQVTFSKRRRGLFKKAEELSILCDAEVGLIVFSSTGKLFEFSS 59
                    699*********************************************96 PP
2K-box61.82.6e-2176171499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      s++++ +++ +  + ++++L k++e+  r++R++ G+dL++L+++eLqqLe+ Le++l+++  +K e ++eqi++l+kk  +l een++Lr+++
  XP_020692709.1  76 LSKQDQPSNDLQLENSDYERLSKQLEEANRQLRNMRGDDLHDLTIEELQQLEKTLETGLRRVLRRKGEQIMEQINDLRKKGLQLMEENRCLRQQV 170
                     4555678888999999*****************************************************************************98 PP

           K-box  99 e 99 
                      
  XP_020692709.1 171 V 171
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAREKIQIRK INNATARQVT FSKRRRGLFK KAEELSILCD AEVGLIVFSS TGKLFEFSSS  60
SMKQIIEKQN TQSRNLSKQD QPSNDLQLEN SDYERLSKQL EEANRQLRNM RGDDLHDLTI  120
EELQQLEKTL ETGLRRVLRR KGEQIMEQIN DLRKKGLQLM EENRCLRQQV VEMSKMGKQI  180
VAESENVLHE EGQSSDSITN ISNSGNSREN DDSSDTSLRL GLSCAGWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-85MIKC_MADS family protein