PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692833.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 417aa    MW: 44961.5 Da    PI: 8.1865
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692833.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068184200319
                     ETTTTEEESSHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrH 19 
                     C +Cg+ F+ +  L+ H
  XP_020692833.2 184 CYYCGEEFKKWQALEDH 200
                     ***************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MTGIWFAIKK SLQCKSEAGQ VHEPERKGKG IHLNYTTKKK TSPWCSSCSP SVTILKDVIH  60
GSHVPPDPPM TSSCSPRSVG SSDLVHPLTH EVLASVSGNE VKIAACHGGG GFGSYSCGGG  120
PLVDHGLMGR GRAGIQNCSA LGEEGMAACS RRKKDKVSYS FSGGIEINEG QEIEANGSYG  180
ALACYYCGEE FKKWQALEDH HVCNHAVTEL EEGESSKKIV EKICQASFSD QSDRSCLIIE  240
KILKVHNMQK TLANFEKYRE SVKARASKLQ KKHARCIADG NELLRFHGTT ISCSLGVNGS  300
SSLCSSENCN VCRIIKLGFS VIWDMNEGVG VFTASTSERA FESIETSKEK PLPKKALLVC  360
RAIAGRIHKP LDNLQEVIGL PGFDSLAGKV GGHSSLDVLY LLNPRALLPC FVVICKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RRKKDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-123C2H2 family protein