PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692843.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 243aa    MW: 27260 Da    PI: 6.9275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-1184131454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE+ RRdr+N++f eL ++l +    + +Kl+K++iL  A++ + +L
  XP_020692843.1  84 SKACREKMRRDRLNDKFLELGSILEPG---KPPKLDKVAILCDATRMVTQL 131
                     5778**********************9...99*************999888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MASPENPNWL LDCPLIDDLS APPANGFIWA PQEFNHQSKV RPPFSTHEGY VSMGANDPFV  60
ETETFKEQGS QKRARSESSS QAGSKACREK MRRDRLNDKF LELGSILEPG KPPKLDKVAI  120
LCDATRMVTQ LRADAQKLND LNQTLQDKIK ELKAEKIELR DEKQRLKTEK ESLEQQAKFL  180
NAPRPSFIPH PSLIPTAFSA PGKNPGQKLM MPVMGYPGFP MWQFMHPSDV DTSQDAESCP  240
PVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-80bHLH family protein