PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692896.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 409aa MW: 46258.4 Da PI: 5.2455

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.4	1.9e-34	189	243	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLH++Fveav++LGGse+AtPk++l++m+v+gLt++hvkSHLQkYR+ XP_020692896.1 189 KPRMRWTPELHDKFVEAVNHLGGSERATPKSVLKFMQVDGLTIYHVKSHLQKYRT 243 79****************************************************8 PP
2	Myb_DNA-binding	56.8	5e-18	191	242	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e+++++v+av+ lGg t+k++ + m+ g+t +++ks++qky+ XP_020692896.1 191 RMRWTPELHDKFVEAVNHLGGSeraTPKSVLKFMQvDGLTIYHVKSHLQKYR 242 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MERQFKSNHV SQLDTYTSSV GVVKPSSDIG FTSDLLEERK KSNVLLRSQS ANCVTMPPST 60 SYTYAEGYLP SSDKFSQEFN ESSWCPASLE DILDYPDSVT AASNQIQSNR AMNACSKEQN 120 ELADLTELMN DYCLELFNES DDNNVQPKGD QPLSNASLHQ QSKYPSISSS MELGSVSWLS 180 PSTTASATKP RMRWTPELHD KFVEAVNHLG GSERATPKSV LKFMQVDGLT IYHVKSHLQK 240 YRTTRVRPGL SEGAVESNNN SSIQNPSFSL KCGDITEALR LQVELQKRLH EQLEVQRKLQ 300 LQIEEQGKHL QIMFEKQKDG FDKLKAPLPS ERLSEPMENE TSEKDQKETE SVHHMKEIFL 360 EVEDIHKLTN HQSNPPDDIR PSPACESDQS PPEKRKRGED DDRCSKRLC

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MERQFKSNHV SQLDTYTSSV GVVKPSSDIG FTSDLLEERK KSNVLLRSQS ANCVTMPPST  60
SYTYAEGYLP SSDKFSQEFN ESSWCPASLE DILDYPDSVT AASNQIQSNR AMNACSKEQN  120
ELADLTELMN DYCLELFNES DDNNVQPKGD QPLSNASLHQ QSKYPSISSS MELGSVSWLS  180
PSTTASATKP RMRWTPELHD KFVEAVNHLG GSERATPKSV LKFMQVDGLT IYHVKSHLQK  240
YRTTRVRPGL SEGAVESNNN SSIQNPSFSL KCGDITEALR LQVELQKRLH EQLEVQRKLQ  300
LQIEEQGKHL QIMFEKQKDG FDKLKAPLPS ERLSEPMENE TSEKDQKETE SVHHMKEIFL  360
EVEDIHKLTN HQSNPPDDIR PSPACESDQS PPEKRKRGED DDRCSKRLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	3e-58	G2-like family protein