PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692919.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 312aa    MW: 35170.9 Da    PI: 6.5184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.7e-15111162155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++++ + a+i+  A++Y+k+L+
  XP_020692919.1 111 QRMTHIAVERNRRKQMNEYLALLRSLMPLS---YAQRGDQASIVGGAINYVKELE 162
                     79****************************...*******************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MALEAVFFQD LLSCNVKDIY SHWEIAGLID EEKSLPFYGN WEASCYSYTG QVLQEWDGNS  60
STQPLDLGES TAMAETSHKE DKAAVTSSAS NGRKKRRRAK SLKNKEEVEN QRMTHIAVER  120
NRRKQMNEYL ALLRSLMPLS YAQRGDQASI VGGAINYVKE LEQLLQFLEV RKQLKQQEEN  180
RVHDLTPLAR FFSFPQYSLT NTTAAAAGGV DTVPANPSSL ADIEVTIVES HANLKVLCRR  240
RPKQLLKLVV GLQSLRLSAL HLNVTTFEAM VLYTFSLKVE EECQLTTVEE IAGAVHQIVG  300
RIHEEDGFYS SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112123RMTHIAVERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-80bHLH family protein