PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692958.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 250aa MW: 28153 Da PI: 6.7101

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++++G+g+W++++ g+ R+ k+c++rw +yl XP_020692958.1 14 KGPWTPEEDLILVSYIQEHGPGNWRSVPINTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	47	6e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ +++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_020692958.1 67 RGSFTPHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRPPCCDKP GIKKGPWTPE EDLILVSYIQ EHGPGNWRSV PINTGLLRCS KSCRLRWTNY 60 LRPGIKRGSF TPHEEGIIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLIKLQ 120 ETIGTHDPFA IEAATVNPEF AGVQLQQQHP HSSSTYASST DNISRLLEGW MRSSEKNTMQ 180 SSAMDIRNSG DSLICHEEFC SVKLPEMMPS SAAMAEVEQN RSLTFLEKWL FDDGTGQVDG 240 FLELPSDQLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-94	MYB family protein